ggsegverse.r-universe.dev

[ggsegverse] neuromapr 0.2.2

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Thu, 30 Apr 2026 10:19:46 GMT

Implements spatial null models and coordinate-space transformations for statistical comparison of brain maps, following the framework described in Markello et al. (2022) . Provides variogram-matching surrogates (Burt et al. 2020), Moran spectral randomization (Wagner & Dray 2015), and spin-based permutation tests (Alexander-Bloch et al. 2018). Includes an R interface to the 'neuromaps' annotation registry for browsing, downloading, and comparing brain map annotations from the Open Science Framework ('OSF'). Integrates with 'ciftiTools' for coordinate-space transforms.

[ggsegverse] ggsegSUIT 0.0.1

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Mon, 27 Apr 2026 10:08:50 GMT

SUIT cerebellar parcellation into anatomical lobules and deep nuclei for the 'ggseg' ecosystem. Provides a unified 'ggseg_atlas' object with both 2D polygon geometry and 3D vertex indices, for use with 'ggseg' and 'ggseg3d'.

[ggsegverse] ggsegCerebellum 0.0.1

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Mon, 27 Apr 2026 10:08:34 GMT

Collection of cerebellar parcellation atlases for the 'ggsegverse' ecosystem. Includes anatomical (Diedrichsen 2009), resting-state network (Buckner 2011, Ji 2019, Xue 2021), task-based (King/MDTB 2019), and hierarchical functional (Nettekoven 2024) parcellations. All atlases derived from the DiedrichsenLab cerebellar atlas collection.

[ggsegverse] ggsegArslan 2.0.1

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Mon, 27 Apr 2026 10:08:30 GMT

Arslan multi-level parcellation atlas for the 'ggseg' ecosystem. Provides a unified 'ggseg_atlas' object with both 2D polygon geometry and 3D vertex indices, for use with 'ggseg' and 'ggseg3d'.

[ggsegverse] ggsegAicha 2.0.1

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Sun, 26 Apr 2026 18:15:49 GMT

AICHA (Atlas of Intrinsic Connectivity of Homotopic Areas) atlas for the 'ggseg' ecosystem. Provides a unified 'ggseg_atlas' object with both 2D polygon geometry and 3D vertex indices, for use with 'ggseg' and 'ggseg3d'.

[ggsegverse] ggsegHO 2.0.0

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Sun, 26 Apr 2026 14:35:37 GMT

Harvard-Oxford cortical, subcortical, and cerebellar atlases for the 'ggseg' ecosystem. Includes the original Harvard-Oxford atlas (FSL) and the Harvard-Oxford Atlas 2.0 (HOA-2, Rushmore et al. 2022) as 'ggseg_atlas' objects with 2D polygon and 3D mesh geometry.

[ggsegverse] ggsegIca 2.0.1

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Sun, 26 Apr 2026 10:42:45 GMT

Probabilistic independent component analysis (ICA) cortical atlas for the 'ggseg' ecosystem. Provides a unified 'ggseg_atlas' object with 2D polygon geometry for use with 'ggseg'.

[ggsegverse] ggsegSchaefer 2.0.2

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Fri, 24 Apr 2026 18:11:27 GMT

Schaefer cortical atlas for the 'ggseg' ecosystem. Provides unified 'ggseg_atlas' objects with both 2D polygon geometry and 3D vertex indices, for use with 'ggseg' and 'ggseg3d'. Includes 7-network and 17-network parcellations at resolutions from 100 to 1000 parcels.

[ggsegverse] ggsegChen 1.0.01

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Fri, 24 Apr 2026 18:10:55 GMT

This is a support package for the ggseg, and ggseg3d packages. It contains the Chen atlases to plot using functions from those two packages.

[ggsegverse] ggsegBrainnetome 2.0.3

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Fri, 24 Apr 2026 18:10:43 GMT

Brainnetome atlas for the 'ggseg' ecosystem. Provides cortical and subcortical 'ggseg_atlas' objects with 2D polygon geometry and 3D vertex indices for use with 'ggseg' and 'ggseg3d'.

[ggsegverse] ggsegYeo2011 2.0.2

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Thu, 23 Apr 2026 17:53:13 GMT

Yeo 2011 resting-state network atlases for the 'ggseg' ecosystem. Provides 'ggseg_atlas' objects with 2D polygon geometry for use with 'ggseg'. Includes both 7-network and 17-network parcellations.

[ggsegverse] ggsegGordon 2.0.1

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Thu, 23 Apr 2026 17:51:34 GMT

Gordon resting-state cortical parcellation atlas for the 'ggseg' ecosystem. Provides a unified 'ggseg_atlas' object with 2D polygon geometry for use with 'ggseg'.

[ggsegverse] ggsegPower 2.0.1

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Thu, 23 Apr 2026 17:49:25 GMT

Power functional network cortical parcellation atlas for the 'ggseg' ecosystem. Provides a unified 'ggseg_atlas' object with 2D polygon geometry for use with 'ggseg'.

[ggsegverse] ggsegAAL 2.0.2

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Thu, 23 Apr 2026 17:46:12 GMT

AAL (Automated Anatomical Labeling) atlases for the 'ggseg' ecosystem. Provides unified 'ggseg_atlas' objects for AAL2 (cortical, Rolls et al. 2015) and AAL3 (cortical, subcortical, cerebellum, Rolls et al. 2020), with both 2D polygon geometry and 3D vertex/mesh data for use with 'ggseg' and 'ggseg3d'.

[ggsegverse] ggsegGlasser 2.0.3

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Thu, 23 Apr 2026 17:41:09 GMT

Glasser multi-modal cortical parcellation (HCP) atlas for the 'ggseg' ecosystem. Provides a unified 'ggseg_atlas' object with 2D polygon geometry for use with 'ggseg'.

[ggsegverse] ggsegFreeSurfer 1.0.0

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Thu, 23 Apr 2026 10:44:41 GMT

FreeSurfer cortical and subcortical brain atlases for the 'ggseg' ecosystem. Includes the Desikan-Killiany-Tourville cortical atlas (Klein & Tourville 2012), the Destrieux cortical atlas (Destrieux et al. 2010), and the HCP subcortical atlas with anterior/posterior hippocampus subdivisions. Provides unified 'ggseg_atlas' objects with 2D polygon geometry and 3D mesh or vertex data, for use with 'ggseg' and 'ggseg3d'.

[ggsegverse] ggsegHistorical 1.0.0

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Thu, 23 Apr 2026 10:42:32 GMT

Six historical cortical brain atlases digitally reconstructed by Pijnenburg et al. (2021) from the Dutch Connectome Lab. Includes Brodmann (1909), Campbell (1905), Economo & Koskinas (1925), Flechsig (1920), Kleist (1934), and Smith (1907). Each atlas provides a unified 'ggseg_atlas' object with both 2D polygon geometry and 3D vertex indices, for use with 'ggseg' and 'ggseg3d'.

[ggsegverse] ggseg3d 2.1.1

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Wed, 22 Apr 2026 20:09:50 GMT

Plot brain atlases as interactive 3D meshes using 'Three.js' via 'htmlwidgets', or render publication-quality static images through 'rgl' and 'rayshader'. A pipe-friendly API lets you map data onto brain regions, control camera angles, toggle region edges, overlay glass brains, and snapshot or ray-trace the result. Additional atlases are available through the 'ggsegverse' r-universe. Mowinckel & Vidal-Piñeiro (2020) .

[ggsegverse] ggsegJHU 2.0.0

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Sun, 19 Apr 2026 10:27:42 GMT

JHU and ICBM white matter atlases for the 'ggseg' ecosystem. Includes JHU probabilistic tracts (Hua et al. 2008), ICBM-DTI-81 white matter labels (Mori et al. 2005), and ICBM tract meshes. Provides unified 'ggseg_atlas' objects with 3D mesh geometry, for use with 'ggseg3d'.

[ggsegverse] ggseg 2.1.1

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Thu, 16 Apr 2026 19:18:33 GMT

Provides a 'ggplot2' geom and position for visualizing brain region data on cortical, subcortical, and white matter tract atlases. Brain atlas geometries are stored as simple features ('sf'), enabling seamless integration with the 'ggplot2' ecosystem including faceting, custom scales, and themes. Mowinckel & Vidal-Piñeiro (2020) .

[ggsegverse] ggseg.meshes 0.0.1

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Thu, 09 Apr 2026 10:08:18 GMT

Provides additional brain surface meshes for cortical and cerebellar visualisation in the 'ggsegverse' ecosystem. Cortical surfaces include pial, white, midthickness, semi-inflated, sphere, smoothwm, and orig at fsaverage5 resolution. Cerebellar surfaces include the Spatially Unbiased Infratentorial Template (SUIT) flatmap. All meshes follow the same vertices/faces data frame format used by 'ggseg.formats' and 'ggseg3d'.

[ggsegverse] freesurfer 1.8.1.902

muschellij2@gmail.com (John Muschelli) — Wed, 08 Apr 2026 19:04:47 GMT

Wrapper functions that interface with 'Freesurfer' , a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'Freesurfer' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'Freesurfer' command and returns an R object of class 'nifti' or necessary output.

[ggsegverse] ggseg.formats 0.0.2

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Fri, 03 Apr 2026 10:04:04 GMT

Provides the 'ggseg_atlas' S3 class used across the 'ggseg' ecosystem for 2D and 3D brain visualisation. Ships three bundled atlases ('Desikan-Killiany', 'FreeSurfer' 'aseg', 'TRACULA') and functions for querying, subsetting, renaming, and enriching atlas objects. Also includes readers for 'FreeSurfer' statistics files.

[ggsegverse] ggseg.extra 1.9.9.9001

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Sun, 29 Mar 2026 18:36:55 GMT

Create brain atlas data sets compatible with the 'ggsegverse' plotting packages in 'R'. Provides pipelines for building cortical, subcortical, and white-matter tract atlases from 'FreeSurfer' annotation files, 'GIFTI' and 'CIFTI' surface formats, 'neuromaps', and volumetric 'NIfTI' images.

[ggsegverse] wbcmd 0.1.0

a.m.mowinckel@psykologi.uio.no (Athanasia Mo Mowinckel) — Mon, 23 Feb 2026 21:54:53 GMT

Provides R wrapper functions for the 'Connectome Workbench' command-line tool ('wb_command'). Includes a central dispatcher for executing workbench commands, environment detection, and convenience wrappers for common operations on Connectivity Informatics Technology Initiative (CIFTI), Geometry Informatics Technology Initiative (GIFTI), and surface files.