ggsegHO

Harvard-Oxford cortical and subcortical atlases for the ggseg ecosystem. Includes the original Harvard-Oxford atlas (FSL) and the Harvard-Oxford Atlas 2.0 (HOA-2).

Installation

We recommend installing the ggseg-atlases through the ggseg r-universe:

options(repos = c(
  ggsegverse = "https://ggsegverse.r-universe.dev",
  CRAN = "https://cloud.r-project.org"
))

install.packages("ggsegHO")

You can install this package from GitHub with:

# install.packages("pak")
pak::pak("ggsegverse/ggsegHO")

Harvard-Oxford cortical

library(ggseg)
library(ggsegHO)

plot(ho_cort())

Harvard-Oxford subcortical

plot(ho_sub())

HOA-2 cortical

plot(ho2_cort())

HOA-2 subcortical

The deep grey structures, the brain-stem, and the cerebellum split into grey and white matter — HOA-2 segments the cerebellum by tissue rather than parcellating it, so those structures belong here.

plot(ho2_sub())

Data source

Makris N, et al. (2006). Decreased volume of left and total anterior insular lobule in schizophrenia. Schizophrenia Research, 83(2-3):155-171. doi:10.1016/j.schres.2005.11.020

Rushmore RJ, et al. (2022). HOA2.0-ComPaRe: A next generation Harvard-Oxford Atlas. Frontiers in Neuroanatomy, 16:1035420.