Package: wbcmd 0.1.0

Athanasia Mo Mowinckel

wbcmd: Wrapper Functions for 'Connectome Workbench' Commands

Provides R wrapper functions for the 'Connectome Workbench' command-line tool ('wb_command'). Includes a central dispatcher for executing workbench commands, environment detection, and convenience wrappers for common operations on Connectivity Informatics Technology Initiative (CIFTI), Geometry Informatics Technology Initiative (GIFTI), and surface files.

Authors:Athanasia Mo Mowinckel [aut, cre, cph]

wbcmd_0.1.0.tar.gz
wbcmd_0.1.0.zip(r-4.7)wbcmd_0.1.0.zip(r-4.6)wbcmd_0.1.0.zip(r-4.5)
wbcmd_0.1.0.tgz(r-4.6-any)wbcmd_0.1.0.tgz(r-4.5-any)
wbcmd_0.1.0.tar.gz(r-4.7-any)wbcmd_0.1.0.tar.gz(r-4.6-any)
wbcmd_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
wbcmd/json (API)
NEWS

# Install 'wbcmd' in R:
install.packages('wbcmd', repos = c('https://ggsegverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lcbc-uio/wbcmd/issues

Pkgdown/docs site:https://lcbc-uio.github.io

On CRAN:

Conda:

3.18 score 4 scripts 32 exports 24 dependencies

Last updated from:855466d27f. Checks:9 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK129
source / vignettesOK202
linux-release-x86_64OK120
macos-release-arm64OK115
macos-oldrel-arm64OK112
windows-develOK84
windows-releaseOK77
windows-oldrelOK106
wasm-releaseOK121

Exports:check_wb_resultcifti_averagecifti_correlationcifti_dilatecifti_find_clusterscifti_gradientcifti_mathcifti_parcellatecifti_reducecifti_statscifti_weighted_statsfile_informationget_wb_pathget_wb_settingget_wb_verbosityhave_wbmetric_mathmetric_statsset_wb_pathsurface_curvaturesurface_distortionsurface_generate_inflatedsurface_geodesic_distancesurface_informationsurface_vertex_areasvolume_mathvolume_to_surface_mappingwb_cmdwb_helpwb_help_rdwb_sitrepwb_version

Dependencies:brewcallrclicommonmarkcpp11descevaluatefsgluehighrknitrlifecyclepkgbuildpkgloadprocessxpsR6rlangroxygen2rprojrootwithrxfunxml2yaml

Getting started with wbcmd

Rendered fromwbcmd.Rmdusingknitr::rmarkdownon May 31 2026.

Last update: 2026-02-23
Started: 2026-02-12

Readme and manuals

Help Manual

Help pageTopics
Check the result of a workbench commandcheck_wb_result
Average multiple CIFTI filescifti_average
Compute correlation of CIFTI rowscifti_correlation
Dilate a CIFTI filecifti_dilate
Find clusters in a CIFTI filecifti_find_clusters
Compute gradient of a CIFTI filecifti_gradient
Evaluate expression on CIFTI filescifti_math
Parcellate a CIFTI filecifti_parcellate
Reduce a CIFTI file along a dimensioncifti_reduce
Compute statistics on a CIFTI filecifti_stats
Compute weighted statistics on a CIFTI filecifti_weighted_stats
Display information about a filefile_information
Find the wb_command executableget_wb_path
Look up a workbench settingget_wb_setting
Get the workbench verbosity settingget_wb_verbosity
Check if Connectome Workbench is availablehave_wb
Evaluate expression on metric filesmetric_math
Compute spatial statistics on a metric filemetric_stats
Set the path to wb_commandset_wb_path
Compute surface curvaturesurface_curvature
Measure distortion between surfacessurface_distortion
Generate inflated surfacesurface_generate_inflated
Compute geodesic distance from a vertexsurface_geodesic_distance
Display surface informationsurface_information
Compute vertex areas of a surfacesurface_vertex_areas
Evaluate expression on volume filesvolume_math
Map volume data to a surfacevolume_to_surface_mapping
Execute a Connectome Workbench commandwb_cmd
Access wb_command help textwb_help
Render wb_command CLI help as Rd markupwb_help_rd
Situation report for Connectome Workbenchwb_sitrep
Get Connectome Workbench versionwb_version