This package is considered a duplicate. The official version of this package is found at:https://lcbc-uio.r-universe.dev/wbcmd

Package: wbcmd 0.1.0

Athanasia Mo Mowinckel

wbcmd: Wrapper Functions for 'Connectome Workbench' Commands

Provides R wrapper functions for the 'Connectome Workbench' command-line tool ('wb_command'). Includes a central dispatcher for executing workbench commands, environment detection, and convenience wrappers for common operations on Connectivity Informatics Technology Initiative (CIFTI), Geometry Informatics Technology Initiative (GIFTI), and surface files.

Authors:Athanasia Mo Mowinckel [aut, cre, cph]

wbcmd_0.1.0.tar.gz
wbcmd_0.1.0.zip(r-4.7-any)wbcmd_0.1.0.zip(r-4.6-any)wbcmd_0.1.0.zip(r-4.5-any)
wbcmd_0.1.0.tgz(r-4.6-any)wbcmd_0.1.0.tgz(r-4.5-any)
wbcmd_0.1.0.tar.gz(r-4.7-any)wbcmd_0.1.0.tar.gz(r-4.6-any)
wbcmd_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
wbcmd/json (API)

# Install 'wbcmd' in R:

install.packages('wbcmd', repos = c('https://ggsegverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lcbc-uio/wbcmd/issues

Pkgdown/docs site:https://lcbc-uio.github.io

On CRAN:

3.18 score 4 scripts 32 exports 26 dependencies

Last updated from:855466d27f. Checks:9 OK. Indexed: no.

Target	Result	Time
linux-devel	OK	122
source / vignettes	OK	196
linux-release	OK	161
macos-release	OK	97
macos-oldrel	OK	103
windows-devel	OK	87
windows-release	OK	79
windows-oldrel	OK	74
wasm-release	OK	99

Exports:check_wb_result cifti_average cifti_correlation cifti_dilate cifti_find_clusters cifti_gradient cifti_math cifti_parcellate cifti_reduce cifti_stats cifti_weighted_stats file_information get_wb_path get_wb_setting get_wb_verbosity have_wb metric_math metric_stats set_wb_path surface_curvature surface_distortion surface_generate_inflated surface_geodesic_distance surface_information surface_vertex_areas volume_math volume_to_surface_mapping wb_cmd wb_help wb_help_rd wb_sitrep wb_version

Dependencies:brew callr cli commonmark cpp11 desc evaluate fs glue highr knitr lifecycle otel pkgbuild pkgload processx ps R6 rdtools rlang roxygen2 rprojroot withr xfun xml2 yaml

Getting started with wbcmd

Rendered fromwbcmd.Rmdusingknitr::rmarkdown

Last update: 2026-02-23
Started: 2026-02-12

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Check the result of a workbench command	check_wb_result
Average multiple CIFTI files	cifti_average
Compute correlation of CIFTI rows	cifti_correlation
Dilate a CIFTI file	cifti_dilate
Find clusters in a CIFTI file	cifti_find_clusters
Compute gradient of a CIFTI file	cifti_gradient
Evaluate expression on CIFTI files	cifti_math
Parcellate a CIFTI file	cifti_parcellate
Reduce a CIFTI file along a dimension	cifti_reduce
Compute statistics on a CIFTI file	cifti_stats
Compute weighted statistics on a CIFTI file	cifti_weighted_stats
Display information about a file	file_information
Find the wb_command executable	get_wb_path
Look up a workbench setting	get_wb_setting
Get the workbench verbosity setting	get_wb_verbosity
Check if Connectome Workbench is available	have_wb
Evaluate expression on metric files	metric_math
Compute spatial statistics on a metric file	metric_stats
Set the path to wb_command	set_wb_path
Compute surface curvature	surface_curvature
Measure distortion between surfaces	surface_distortion
Generate inflated surface	surface_generate_inflated
Compute geodesic distance from a vertex	surface_geodesic_distance
Display surface information	surface_information
Compute vertex areas of a surface	surface_vertex_areas
Evaluate expression on volume files	volume_math
Map volume data to a surface	volume_to_surface_mapping
Execute a Connectome Workbench command	wb_cmd
Access wb_command help text	wb_help
Render wb_command CLI help as Rd markup	wb_help_rd
Situation report for Connectome Workbench	wb_sitrep
Get Connectome Workbench version	wb_version